Protein Info for AO353_22360 in Pseudomonas fluorescens FW300-N2E3

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 TIGR03864: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system" amino acids 3 to 237 (235 residues), 344.8 bits, see alignment E=1.2e-107 PF00005: ABC_tran" amino acids 19 to 162 (144 residues), 109.5 bits, see alignment E=1.1e-35

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 87% identity to ppu:PP_2668)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WMX3 at UniProt or InterPro

Protein Sequence (251 amino acids)

>AO353_22360 ABC transporter ATP-binding protein (Pseudomonas fluorescens FW300-N2E3)
MNALDVCDVSFAYGPREALKQVSFSLAPGRFAALLGPNGAGKSTLIALLTRLYDLQRGDI
RVGGCSLRNAARPALRQLGVVFQQSTLDLDLSIEQNLRYHAALQGLSRGQSQRRVDAELA
RQSLSERRHERVRELNGGHRRRVEIARALLHEPRLLLLDEASAGLDPASRLALNRHIRTL
CHEQQISALWTTHLLDEVHPNDDLLILHQGRLVASGQADALSREHGGDLDAAFARLTPSP
GLAATTGVSTR