Protein Info for AO353_22000 in Pseudomonas fluorescens FW300-N2E3

Annotation: nitric oxide reductase activation protein NorD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 PF00092: VWA" amino acids 429 to 574 (146 residues), 30.9 bits, see alignment E=1.6e-11

Best Hits

KEGG orthology group: K02448, nitric oxide reductase NorD protein (inferred from 85% identity to pba:PSEBR_a3166)

Predicted SEED Role

"Nitric oxide reductase activation protein NorD" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VXS2 at UniProt or InterPro

Protein Sequence (613 amino acids)

>AO353_22000 nitric oxide reductase activation protein NorD (Pseudomonas fluorescens FW300-N2E3)
MAFTVELEEWVGSAWHRFITRRASPDFPEARVELINQQRPLALLFRAMGGANGIGLEAAS
DRDLLLRRNVLQQIAGTCKQVPLAWCDENTLRLPSSLAVFPEVALNEELYRWLALLAAQA
GRMRHWGRDNQRWTQLLLRRYPALRARYQRLVEAHLQLRPDPASLSRSEAALERVLCQAL
REPGSVEDFPRSERAAWPLPLWLYPPQHLASPLAADLGDESEESLTTPPGEQKGGRKRAK
RIDDSPRDGGLLVVRLENLFSWTEHVDLDRWSDDSEDPDAARVADDLDELTLSRTRLRKG
GGLKLHLDLPPADVDDIPLGEGIKLPEWDYRKQQMQGDFVNLQMMVPRDCDAQPLPPRLK
VSAQRLRRQFEHLRNDRQWLRQQLQGSELDMQAWLDFHVEREHGQCAERGLFMEQRQTRR
DLACLLLADMSMSTDAHLNDEHRVIDVIRDTLLLFGETLSGLGDDFALYGFSSLRRQQVR
MQELKSFTQRYDDNTRGRIQGLKPGYYTRMGAAIRQATRLLGSSKRRSKLLLLLTDGKPN
DLDLYEGRYGVEDTREAVLEARRQGLTPFCITIDREAGDYLPYMFGANGYTVIRQPEQLP
LRLPQLYRQLTQP