Protein Info for AO353_21985 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 85 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 53 (23 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details PF03626: COX4_pro" amino acids 9 to 77 (69 residues), 50.3 bits, see alignment E=1.3e-17

Best Hits

Swiss-Prot: 58% identical to YNQ3_PSEST: Uncharacterized 8.5 kDa protein in nirQ 3'region from Pseudomonas stutzeri

KEGG orthology group: None (inferred from 68% identity to pba:PSEBR_a3169)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WG57 at UniProt or InterPro

Protein Sequence (85 amino acids)

>AO353_21985 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MSASRLLLVCWAALATLSVCTVVLSQVGATWLLSIAILLVAVGKAWLITDGFMEMRHAPQ
LWRRLMVSWALVLAVVVGLTLVLVD