Protein Info for AO353_21880 in Pseudomonas fluorescens FW300-N2E3

Annotation: LuxR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 PF03472: Autoind_bind" amino acids 25 to 174 (150 residues), 87.3 bits, see alignment E=7.6e-29 PF00196: GerE" amino acids 191 to 245 (55 residues), 57.6 bits, see alignment E=7.8e-20

Best Hits

KEGG orthology group: None (inferred from 81% identity to pba:PSEBR_a718)

Predicted SEED Role

"Transcriptional regulator ahyR/asaR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H0M9 at UniProt or InterPro

Protein Sequence (253 amino acids)

>AO353_21880 LuxR family transcriptional regulator (Pseudomonas fluorescens FW300-N2E3)
MQTKLSDFNSRLLSGRNLDEQMDNALLMVKELGFDALVYDYSPVPLDHEGALITPSVLKL
RNTPRDWYSLWCGEGYYQIDPVQHLAVNAVSPFVWSYQRDADTILRSFIGQSHAPVVSYL
QDSQMTCGVTVPIHLPKGGFATLTGLRSGSSASALQDLRQTLGDFSLISHSLQEVAYPLL
NKEVRASPFRLTRRERECLSWAAEGLTTVEIATRLNRSLATITLHLTSAMHKLGAKNRVQ
SVVRATHYRLLDS