Protein Info for AO353_21685 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 68 to 92 (25 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 208 to 223 (16 residues), see Phobius details PF09948: DUF2182" amino acids 70 to 227 (158 residues), 62.7 bits, see alignment E=2.2e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WG20 at UniProt or InterPro

Protein Sequence (241 amino acids)

>AO353_21685 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MGAYLIQAVTRGFLPWLILISLAGWGLLLGSVQMLSIPAFCGAFVPLAYAASWQGIEQAL
LFNPPRQLVVSWLSMLLAMTPLLLVHPLTYVWQRSLLRKRWQAVVLFVLGFTSVWTLAGL
LLMTLVVAARVMLGVSQAMAFVVTLAVCLVWQASPLKQRYLNRCHHQPRISAFGWGFIKD
CLAYGVVSAGWCVGSCWALMLLPMLAEQGHVPLMLVSMGWMLWERFKRPRPVRWHWPRLF
R