Protein Info for AO353_21200 in Pseudomonas fluorescens FW300-N2E3

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 241 to 270 (30 residues), see Phobius details amino acids 292 to 305 (14 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 5 to 217 (213 residues), 29.4 bits, see alignment E=1.1e-10 PF00535: Glycos_transf_2" amino acids 7 to 123 (117 residues), 52.8 bits, see alignment E=7e-18 PF13632: Glyco_trans_2_3" amino acids 100 to 271 (172 residues), 33.9 bits, see alignment E=4.5e-12

Best Hits

KEGG orthology group: None (inferred from 78% identity to ppf:Pput_2577)

Predicted SEED Role

"Glycosyl transferase, group 2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VXZ0 at UniProt or InterPro

Protein Sequence (325 amino acids)

>AO353_21200 glycosyl transferase (Pseudomonas fluorescens FW300-N2E3)
MATGVGVVVIGRNEGLRLERCLASLGGAAQKVIYVDSGSTDGSVQMARRLGVEVVELDMS
IPFTAARARNEGFACVQRLLPAMRYVQFVDGDCEVVGGWLPRAQAFLDAQPEVAVVCGRR
RERFPQRSIYNLLCDLEWDTPIGEAKACGGDALIRAEAFAAVSGFRAELIAGEEPELCVR
LRANGWKVWRLADEMTLHDAAMTRFGQWWRRTLRGGYAFAEGAFLHGAAPEQHWQRESRR
AWLWGLGVPLATVMASLMLGWFGLLLLLVYPLQVARLARRGDRSARENWLQAFFLVLSKF
PEMLGQVKFLLHRLGAGKTALIEYK