Protein Info for AO353_21145 in Pseudomonas fluorescens FW300-N2E3

Annotation: ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 42 to 67 (26 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 100 to 100 (1 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 137 to 154 (18 residues), see Phobius details amino acids 166 to 182 (17 residues), see Phobius details amino acids 193 to 210 (18 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 281 to 310 (30 residues), see Phobius details amino acids 319 to 338 (20 residues), see Phobius details amino acids 405 to 430 (26 residues), see Phobius details amino acids 450 to 479 (30 residues), see Phobius details PF04932: Wzy_C" amino acids 281 to 420 (140 residues), 39.2 bits, see alignment E=3.1e-14

Best Hits

KEGG orthology group: None (inferred from 70% identity to ppw:PputW619_2914)

Predicted SEED Role

"FIG00956128: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W8S6 at UniProt or InterPro

Protein Sequence (508 amino acids)

>AO353_21145 ligase (Pseudomonas fluorescens FW300-N2E3)
MPEHFRALIVILVLAGIVFALARRPAVDLIPHHDFTRRRNLWFALTLLAFVSHSFWVYAG
IAAIILTVARQRERNPLALFFLLLFLIPPAPAEIPGFGLINYFFALNHIRLLALCLLLPA
FFMLRRQASTLSFGRTWPDKLLAAYLLLTSLLYLRNTTLTDNLRQTLYLFTDVFLPYYVA
SRALKELSDFKDALLGFVLAAMVLALIGLVEFARHWLLYNALIVALDMHWGMSSYLNRGD
SLRASATTGQAIALGYVISVAIGFYLFLRESVRSRLQQCLGALLLAGGLFAPVSRGPWIG
AAVMITVFIATGRKAVKRLMLLAIAGALALPLLAIVPGGQKFLDLLPFIGTVDVENITYR
QRLIDNSVIVIQRNPWLGSFDYRNTPEMQSMIQGEGVIDIVNTYIALALDIGLIGLTLFV
FFFATVLLGIHTAIRSFPNKDDEARRLGRALLAVLAGILVTIFTVSSITVIPVVYWSVAG
LGVAYAQMVRRLKRTETASSASANLQLR