Protein Info for AO353_20825 in Pseudomonas fluorescens FW300-N2E3

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 15 to 42 (28 residues), see Phobius details amino acids 54 to 143 (90 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 218 to 236 (19 residues), see Phobius details amino acids 248 to 266 (19 residues), see Phobius details amino acids 273 to 294 (22 residues), see Phobius details amino acids 300 to 316 (17 residues), see Phobius details PF02653: BPD_transp_2" amino acids 48 to 311 (264 residues), 173.7 bits, see alignment E=2.3e-55

Best Hits

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 95% identity to pfo:Pfl01_1921)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H0K5 at UniProt or InterPro

Protein Sequence (325 amino acids)

>AO353_20825 ABC transporter permease (Pseudomonas fluorescens FW300-N2E3)
MITALSAGKRSSNFYGLGTYLGLAGALLAMIALFSVLSSHFLSYDTFSTLANQIPDLMVL
AVGMTFVLIIGGIDLSVGSVLALAGSTVSVAILGWGWSVLPAALLGMAAAAVAGTITGSI
TVAWRIPSFIVSLGVLEMARGVAYQMTGSRTAYIGDAFAWLSNPITFGISPSFIIALLVI
FIAQAVLTRTVFGRYLIGIGTNEEAVRLAGINPKPYKILVFSLMGLLAGIAALFQISRLE
AADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGATEPTKR
IITGAVIVVAVVLDTYRSQRASRRS