Protein Info for AO353_20650 in Pseudomonas fluorescens FW300-N2E3

Annotation: peptidoglycan-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 873 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 417 to 437 (21 residues), see Phobius details amino acids 593 to 612 (20 residues), see Phobius details TIGR03505: FimV N-terminal domain" amino acids 172 to 243 (72 residues), 87.8 bits, see alignment E=3.1e-29 TIGR03504: FimV C-terminal domain" amino acids 829 to 871 (43 residues), 68.8 bits, see alignment 3.1e-23

Best Hits

KEGG orthology group: K07288, uncharacterized membrane protein (inferred from 75% identity to pfl:PFL_2069)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VS72 at UniProt or InterPro

Protein Sequence (873 amino acids)

>AO353_20650 peptidoglycan-binding protein (Pseudomonas fluorescens FW300-N2E3)
MVQVRKLVLAIAAASALSSGMAHALGLGELTLKSTLNQPLVAEIELLDVKDLTAAEVVPS
LASADDFAKAGVDRQAFLNDLTFTPVLNASGKSILRVTSSQPLSEPMVKFLVQVMWPSGR
LLRDYSVLLDPSKFSPQTADAAAQSAPAQAPAINAPVTGASKPKQHVTTPRDTLWEIAAK
ARNGGSIQQTMLAIQALNPNAFIDGNINRLKTGQVLRLPDATQSTSLPQPKAIAEVAAQN
TAWRQGRRSVHRAQAQQLDATKRGHDVVAPQGTAKDKLSLVSAESGKKGGKGAAGDSKAI
SNKLAVAQEGLDTTRRDNAELKSRITDLQSQMDKLQRLIELKNNQLAKMQAEGAGENSAA
QPSAPISADLVTQPAAAPAPAVVPEATPAAVPAEAPIQAIPAASDEQKYNELLTNPILLG
LVGGGAVVVLLLLLLLARRRKAQQEAERHKRMAKALAEESDLTQDFDLPESSFEGLEVPP
PVVKLATPPAPAPVVAPVVVTPPIAAPLVAPAAERSDDVLAQAQSHINAGRLNQAASLLE
EGIKQEPQRSDLRLKLMEVYGQQGDRSAFVAQERQLVANGKNHADVEQLKSRFPAMVAVA
AVGGIAAAAVAAELDAQYVKDLLHEEPKAPEPEAAPADDDFDSAFDLSLDDLEAASPTVV
TPETPEPALDLDAFPLDDDLSFESVLQQQTEAKDSLDDLSDFDLDLGGDVPDATLADDEF
LLNLDDDLKDLPAVESPAVTEAALDDLELPADFDLSLADEIDAPAKPEPDDFMSELDDVN
AELDRLSGSLEHPPIAAPSFTAEDAAAGMEMEMGEPDFDFLSGTDEVATKLDLAQAYIDM
GDNDGARDILGEVLSEGNDGQKSEAKDMLARMA