Protein Info for AO353_20290 in Pseudomonas fluorescens FW300-N2E3

Annotation: fimbrial assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 785 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF00577: Usher" amino acids 231 to 693 (463 residues), 110.1 bits, see alignment E=1.4e-35 PF13953: PapC_C" amino acids 711 to 769 (59 residues), 47 bits, see alignment 1.9e-16

Best Hits

KEGG orthology group: K07347, outer membrane usher protein (inferred from 83% identity to pfo:Pfl01_3669)

Predicted SEED Role

"Sigma-fimbriae usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WNV1 at UniProt or InterPro

Protein Sequence (785 amino acids)

>AO353_20290 fimbrial assembly protein (Pseudomonas fluorescens FW300-N2E3)
LSQDQARSIQCLSWAVVGVCWLAGVPHSNAGDLPPPPTGMEAVADAQLFLELVVNQMNTG
RVVAVEQRGGRLFLPASVLRETGMKLPEHLSAEVGLDSLEGLHSEYDSQGQRLLLNVPPE
WLPEQFIGNRQAYPRTPALSSFGALLNYDLYLNDTDDGGTYLAAWNEVRFFDSWGTLSNT
GQYRRTLSGDASSTLNNGYLRYDTTWRYSDDDRLLTYEAGDLVSGALPWSSSVRLGGVQL
SRDFGVRPDLVTYPLPQFAGEAAVPSSVDLFINGYKSSSADLQPGPYTLTNIPFINGAGE
AVVVTTDALGRQVSTTVPFYVTSSLLQQGLTDFSVAAGTLRRDFGIRDFGYGPGVTSGSL
RYGLTDSLTLESHAEASDSLTLGGVGGNLRLGNVGVLNTAVSQSQFDGTRGQQLSLGYQY
SSQRYSLSYQRVQRRDQYADLSMIDSPFASLSQRSEQVTLNLNLDTWGSLGAGYFDVRAG
DDSRTRLLNLTWSKPLWRNTSFYLSANREIGDSNWAMQAQLVIPFDLRGSLALSTERSKT
GESRQRVNYSQAVPTQGGLGFNLGYAHGQGPDYRQADLTWRLQSVQLQAGVYGSSEAETR
WADASGSLVWMDRQVFAANRIDDAFVVVSTKGFADIPVRYENQLVGQTDGKGHLLVPWSS
AYYRAKYEIDPLNLPSNVQSPNVEQRVAVRRGSGYLLEFPLTRVVAASVVLVDTRQQELP
LGSNVLHEQSGVNAVVGWDGLVYLENLQTRNTLHVTLADGRTCGAQFNVDIRQEQVPLIG
PLVCQ