Protein Info for AO353_20025 in Pseudomonas fluorescens FW300-N2E3

Annotation: cytochrome C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 42 to 115 (74 residues), 22.5 bits, see alignment E=1.2e-08 amino acids 147 to 212 (66 residues), 27.5 bits, see alignment E=3.3e-10 PF00034: Cytochrom_C" amino acids 45 to 118 (74 residues), 32.2 bits, see alignment E=2.4e-11 amino acids 147 to 215 (69 residues), 37.8 bits, see alignment E=4e-13

Best Hits

KEGG orthology group: None (inferred from 35% identity to pen:PSEEN0080)

Predicted SEED Role

"Cytochrome c4" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WJ03 at UniProt or InterPro

Protein Sequence (219 amino acids)

>AO353_20025 cytochrome C (Pseudomonas fluorescens FW300-N2E3)
MNATGMKSTFNRSHLLLALCVVALTGCTGTTEQASEKTSPMSGIAMVDKVCSMCHGLTGE
SVSPMFPKLAGQQKEYLKLQLTDFKGHVRSDKTGTQYMWGFTHLTETQISELADYFSSQS
PMKADADKFDPRGELIFRKGLPGSGVAQCSSCHGAEGQGNGQFPRLAGQHAEYMIRQLKV
FQQTDQRPRGELMKQVTHSLSDEDAASVAHYIATLGAKK