Protein Info for AO353_19915 in Pseudomonas fluorescens FW300-N2E3

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 20 to 483 (464 residues), 440.5 bits, see alignment E=3.6e-136 PF02321: OEP" amino acids 82 to 270 (189 residues), 49 bits, see alignment E=3.4e-17 amino acids 301 to 480 (180 residues), 112.8 bits, see alignment E=9.1e-37

Best Hits

KEGG orthology group: None (inferred from 56% identity to gur:Gura_1297)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H0I5 at UniProt or InterPro

Protein Sequence (497 amino acids)

>AO353_19915 RND transporter (Pseudomonas fluorescens FW300-N2E3)
MCQFRVHRPLRLHARVLPAIMLMAMSACTVGPDFSRPPTPSQSGYTGNPATTTVAAQGQA
QHFLPGAEVVPDWWRLFKSGSLDAVVRQATANNQTLQAAEASLRQSQDTLMAGHGVFYPH
LDLHAGATRERNAPLQQGLSTGGTIFNVVTLSGTISYTLDVFGGQRRTVEGLQAEVDHQA
WLTHAAYLTLTANVVNTAIARAGYVAQWRATEQLIALQKQQLQTTEVQVRSGTAPYSAVL
SLRSLIASNEALLPALEQKISQAEHLLATLEGVAPTDVSLPDIELTGLSLPTDLPVSLPS
RLVRQRPDILSAEAQLHRASANIGVATAAMFPSFNLTGTYGTAGSNLGSLFASGGRFWSV
GPSIDVPLFQGGSLWFGRKAAIDAYQQAAANYRQTVLESFAQVADALKALEFDAQALQKQ
TEAQATAEEALRLLQANYRSGLVTYLDLLAADVQLHQVNIAYLQALAQRHQDTVGLFVAL
GGGWWNTPPPAGSRQTP