Protein Info for AO353_19905 in Pseudomonas fluorescens FW300-N2E3

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 PF00005: ABC_tran" amino acids 34 to 182 (149 residues), 123.5 bits, see alignment E=1e-39

Best Hits

Swiss-Prot: 41% identical to LOLD_CHRSD: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)

KEGG orthology group: K02003, (no description) (inferred from 70% identity to gur:Gura_1294)

Predicted SEED Role

"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VWY0 at UniProt or InterPro

Protein Sequence (239 amino acids)

>AO353_19905 ABC transporter (Pseudomonas fluorescens FW300-N2E3)
MSSDQTGSADHPAIDSSGLTKWFGEGDVRMKAVDQVSLVAQFGEMVFIVGPSGSGKTTLL
SMISGILRPDAGTVKINGNDIWSLSTDQLAELRLNNIGFVFQDYHLFARLTAAENVAIPL
ILKHCDWDKAITQAKQSLEVVGLKDRGDILPVKLSGGEQQRVAIARAIIGGPQLLILDEP
TASLDGDTGKMIIAFVKSNILNQQRCILIVTHDARINEYADRIIHMEDGRISEPDRTSS