Protein Info for AO353_18525 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family" amino acids 7 to 200 (194 residues), 204.5 bits, see alignment E=5e-65 PF01300: Sua5_yciO_yrdC" amino acids 22 to 198 (177 residues), 163.3 bits, see alignment E=2.1e-52

Best Hits

Swiss-Prot: 60% identical to YCIO_SHIFL: Uncharacterized protein YciO (yciO) from Shigella flexneri

KEGG orthology group: K07566, putative translation factor (inferred from 92% identity to pba:PSEBR_a4356)

Predicted SEED Role

"Hypothetical YciO protein, TsaC/YrdC paralog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W1U0 at UniProt or InterPro

Protein Sequence (209 amino acids)

>AO353_18525 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
VSQFFQIHPENPQARLIKQAVEIIRNGGVVIYPTDSSYAIGCQIGDKNAVERVRRLRQLD
EKHNFALICSDLSQLGLFAKIDTGTFRLLKAHLPGPYTFILNATREVPRLLLHPKKRTIG
LRVPSHPIALALLEELGEPLMSVTLIMPGDTDPLSDPYEMRQLLEHQVDLIIDGGFGGIK
ASTVINLADGEPEVIRVGCGDPAPFTVEA