Protein Info for AO353_17970 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 703 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07715: Plug" amino acids 49 to 151 (103 residues), 69.9 bits, see alignment E=2.5e-23 PF00593: TonB_dep_Rec" amino acids 224 to 669 (446 residues), 122.3 bits, see alignment E=5.1e-39

Best Hits

Predicted SEED Role

"Outer membrane receptor proteins, likely involved in siderophore uptake @ TonB-dependent siderophore receptor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VRG4 at UniProt or InterPro

Protein Sequence (703 amino acids)

>AO353_17970 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MTRTKLSLLIPLLGSFSAQTWAEETEQQPGTLNMQATVVSATRSEASIASIPGSVQVIDE
QQVREQSGAGRRVSDILGQLVPGLAPSSGGMSNFGQTLRGRNMLVLIDGVSQNATRDNFR
QLNSIAPASIERIEVISGASSIYGAGASGGIINIITKRNQGQDIAYSSKLGLTSGNNLNS
KGFAYEAFQSATGRKDALDWYVSADLTQRNDQFDGNGKRIPQDTSQGSNMDTETYDLQGR
FGYELDADKKLSLSLQDYKDQQDTDFTKDPKNLQQAVAVKGLKLDDQPYTHNQAVNLNYT
DKDFYGQGLQLESYWRRADALFFPDLSRGKAGIADNNSVQDVYGLRAAIDTPLPAIGSAT
GNLVWGADYDHERSRQRGDQYTLKGLTYSKTGTTYEMGPDLETTTKALFGQMSWDVGDWT
LRGGVRREWIESEVADSIAYGQIVQTGVRATLPGDTLKYDATLYNLGAVYHLSENQDLFA
NYSQGFSLPDIQRFLRDVNSTFDIQSLNAQAIKVDSYELGWRGNWDQWQADVTVYENTSD
VTQFYDANDRVLRLINQKERVRGIENSLTYRATDHWSVGGTYAWAKGETEQNGKWIDLPA
TRISPAKTTLFVGYTEDDYTLRLQGMRLASYDAAAKDNNGRDIKGYTLVDLLGSVRLPVG
RLEGGVYNLTDRTYVNLFAQANAKAPFANAEGRTLSMSYSIDW