Protein Info for AO353_17955 in Pseudomonas fluorescens FW300-N2E3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 41 to 59 (19 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 87% identity to pfo:Pfl01_1400)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W1B6 at UniProt or InterPro

Protein Sequence (165 amino acids)

>AO353_17955 MFS transporter (Pseudomonas fluorescens FW300-N2E3)
MDTMTENDYLIAWGLYAFAALGCLLVWMRLTRWMWRWLREPLRLLMVVLLFSPTIIDPVK
EKFAPAIAITALDLLFKVGNNIWRAISDLVMYSMIAFGIYLIFALIRFPIERAANARKER
EAAAKAAAKAADPDDDQPFGGAGDDRYGRPPVPSNPQRSRVEPRL