Protein Info for AO353_17905 in Pseudomonas fluorescens FW300-N2E3

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1077 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 335 to 355 (21 residues), see Phobius details amino acids 361 to 381 (21 residues), see Phobius details amino acids 388 to 405 (18 residues), see Phobius details amino acids 432 to 453 (22 residues), see Phobius details amino acids 464 to 483 (20 residues), see Phobius details amino acids 560 to 578 (19 residues), see Phobius details amino acids 902 to 923 (22 residues), see Phobius details amino acids 931 to 950 (20 residues), see Phobius details amino acids 957 to 981 (25 residues), see Phobius details amino acids 1002 to 1022 (21 residues), see Phobius details amino acids 1034 to 1056 (23 residues), see Phobius details PF00873: ACR_tran" amino acids 5 to 1057 (1053 residues), 662.3 bits, see alignment E=1.2e-202 PF03176: MMPL" amino acids 871 to 1056 (186 residues), 24.4 bits, see alignment E=1.4e-09

Best Hits

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WEI3 at UniProt or InterPro

Protein Sequence (1077 amino acids)

>AO353_17905 RND transporter (Pseudomonas fluorescens FW300-N2E3)
MLGLVKTALLKPYTFIVLAIFICIIGPMAALRTPTDVFPDIGIPVIAVVWQYNGLAPQDM
AGRVIYTYERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTAVSQTVLKQ
MPPGITPPLVLNYSASTVPILQMAFSSPTLSEAKIRDLVQNSIRLPLTSVPGLAIPTPMG
GKQRQITLDLDPQALAAKGLSAQDVGNALAAQNQIIPVGTAKLGPNEYTVLLNNSPQAID
ELNDLPIKTVDGALITIGQVAHVRDGSPPQTNIVRVDGRRAVLMPALKNGNISTLSIIDG
IRQMLPRINETLPPSLKTSLLGDASVFVKQSVGSVAREGIIAALLTSAMILLFLGSWRST
LIIAASIPLAVLSAIALLAASGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKA
VKTAILDGAKQIVGPAFVSLLCICIVFVPMFLLQGIAGYLFRPMALAVIFAMASSFILSR
TLVPTLAMFLLKPHVPEQGPGHHPEDEFINHHEGEHHHTPRHPLLQALLNFQQGFEQRFS
NLRDTYYGLLELALEYRKRFLLGFLACVLASFALLPSLGQDFFPATDAGALSLHVRLPLG
TRIEESAAAFDRIEARIREIIPAEQLDTIVDNIGIPLSGIDMAYSNSGTIGPQDGDIQVT
LKTEHSPTADYVKRLREALPESFPGSHFAFLPADISSQILNFGAPAPLDVKISGPNSDAN
RAYAVELERRLQHVAGIADLRIQQSTGYPSLQVKVDRLRANGLGITERDVTNSMVASLAG
SSQVAPTFWLNPANGVSYGVVAATPQYRLDSLPSLEALPVTGSDGRSQILGGLASISRVQ
SEAVVSHYNVMPTLDLYANVQGRDLGGVAKDIQKVLDDTASLRPKGSVISLHGQIDALHE
AFSGLSFGLLGAVVLIYLLIVVNFQSWVDPFVIITALPAALAGIVWMLFLSGTSLSVPAL
TGAILCMGVATANSILVVSFCRERLAEHGDALKAALEGGYTRFRPVCMTALAMIIGMLPL
ALSEEQNAPLGRAVIGGLILATTATLLFVPVVFSLVHGRQSRANAEENLAGESSHVA