Protein Info for AO353_17895 in Pseudomonas fluorescens FW300-N2E3

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 13 to 469 (457 residues), 405.4 bits, see alignment E=1.6e-125 PF02321: OEP" amino acids 69 to 260 (192 residues), 83.1 bits, see alignment E=1.2e-27 amino acids 284 to 467 (184 residues), 92.2 bits, see alignment E=1.9e-30

Best Hits

KEGG orthology group: None (inferred from 81% identity to pfs:PFLU3938)

Predicted SEED Role

"FIG00608533: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WM26 at UniProt or InterPro

Protein Sequence (474 amino acids)

>AO353_17895 RND transporter (Pseudomonas fluorescens FW300-N2E3)
MRPRLKPLAAVLAMALALQGCSLAPTYKAPPIDLPAQYREQTSDGPWHMAKPAEQLSSQW
WQLYQDPRLDNLQQQLLKANPDLAAALAHFDAAQAYAGQLHAGLFPQVTASAQPLRQRQS
DNRPLRGASQPSVYNSDTAGFALSFDLDLWGRIRNQVAAGDAQAQASADDLAAARLSLQR
QLATLYVQLNGLDAQGKILASSLDDYGQALQLTRDRYQGEIASELDLTRAQSQLAEAKAQ
LDDVRAQRNLTEHAIGELVGQPASDFHLDANSQALNLPSIPGALPSTLLQRRPDVAAAER
RVFAANASIGVARAAWYPDFSLTGLLGGQTAGSGNLLAAGNRYWALGPLVNLPIFDGGRL
DANERQAKAEFEEAAAHYRSQVLRAVREVEDNLAQMRDLQREAEDEQAAVHAAQTTQTLA
MNSYEAGAVNYLDVVTAQTSALQAQRRLQDLQTRQLQASVGLVVALGGGWSNGS