Protein Info for AO353_17805 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 701 transmembrane" amino acids 10 to 30 (21 residues), see Phobius details amino acids 76 to 89 (14 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 181 to 205 (25 residues), see Phobius details amino acids 217 to 242 (26 residues), see Phobius details amino acids 249 to 267 (19 residues), see Phobius details amino acids 287 to 308 (22 residues), see Phobius details amino acids 321 to 343 (23 residues), see Phobius details amino acids 365 to 383 (19 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details PF19830: DUF6311" amino acids 14 to 305 (292 residues), 226.7 bits, see alignment E=2.9e-71

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WI21 at UniProt or InterPro

Protein Sequence (701 amino acids)

>AO353_17805 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MKVSGKHLTISMLPVLMGILAFFIVVGPRALNPMNIAWLDNGDPATHYLGWVFFRYSPWS
FPLGLNPSYGLELGNAIIFSDSNPLFALIFKPFAALLPEPFQYFGLWFLTCFILQSWFAW
KLMGLVTTNVTLRLLGTGLFLFTPAMIARLGVHLSLAGHFLILAALYLALRPQNDKRRLA
WGALLAATALVHAYLLAMVALIWIADLLAKTLRRHLMLPKAFIELVILFLLVSLCCWQAG
YFSVGGSGVGSLGFGLFRANVLTFFDASNWSYVLNDMPGVLGDGEGLAFLGLGGIFLAIC
AFLVSLQGNSNVIVAVRRRPVLLIALLGLALFAVSNKVGIGAFEFDYPLPEFFLSAAGIF
RASGRMIWPVMYVAIFGIIYVVVRGHTQRTALVLLAIALVIQVADTRAGWMGARKLLMVS
PASKWKTPLVDSFWPSAASHYQKVRWVRPQNFSVKWLTLADYAGTYRMATDAVYLGRVSA
VAVEAAQRKADLTLASMKYDADSLYVLDERALLQAAVSLDSSTDVLARVDGLNVLAPGWK
QCADCPAVNAVNPLDLIPLLKQGERMLFTEGSPATAYLAKGWSANEPWGTWSEGTDAEII
LRPTTDVHSLLLETNALLAPTHVRQSLEVRVNEVRLLDTSLIKPEANRIEIALPTEVKKL
IAQQGVLRIQFHFANAISPGELGMGEDSRKLAIGLQALTVH