Protein Info for AO353_17800 in Pseudomonas fluorescens FW300-N2E3

Annotation: sugar translocase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 45 to 66 (22 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 102 to 125 (24 residues), see Phobius details PF04138: GtrA" amino acids 15 to 126 (112 residues), 52.2 bits, see alignment E=3.3e-18

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfo:Pfl01_1381)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H0D6 at UniProt or InterPro

Protein Sequence (128 amino acids)

>AO353_17800 sugar translocase (Pseudomonas fluorescens FW300-N2E3)
VTSAEKSALIKRGLRFAVTGLFVTALHAVVAVLLINYVLALPPVANGVAFSVATLVSYVI
NTSWSFSSRLHGRTLGRFMMVSGAGLLLAMLVAWAAQMAGLHYLLGIGAVALTIPAFTFV
LHNFWTYR