Protein Info for AO353_17605 in Pseudomonas fluorescens FW300-N2E3

Annotation: aminomethyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 TIGR03317: folate-binding protein YgfZ" amino acids 170 to 236 (67 residues), 92.9 bits, see alignment E=4.6e-31

Best Hits

KEGG orthology group: K06980, (no description) (inferred from 82% identity to pfo:Pfl01_1357)

Predicted SEED Role

"Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WEE4 at UniProt or InterPro

Protein Sequence (313 amino acids)

>AO353_17605 aminomethyltransferase (Pseudomonas fluorescens FW300-N2E3)
MADSAFFCTLSHEGVLAVRGSDASKFLQGQLTCNLNYLSDTHASLGARCTQKGRMQSSFR
ILLEGDGVLLAMASELLEPQLADLKKYAVFSKSKLTDESADWVRFGLQHSEAVLSGLGLA
LPREDGAVARAGGLIAIRVSSDRVELWAAASQAGTLRNSLAALLPEGDLNQWLLGQIRAG
IGQVMPQTRELFIPQMLNLQAVGGVSFKKGCYTGQEIVARMQYLGKLKRRLYRLQLDATE
LPEPGIALFSPTHGSSIGEVVIAAHAEQNIELLAVLQAEAADSGDVHLGALEGPALHLLD
LPYQLDRDLEIQR