Protein Info for AO353_17575 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 38 to 56 (19 residues), see Phobius details amino acids 78 to 104 (27 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details PF07331: TctB" amino acids 8 to 143 (136 residues), 74.6 bits, see alignment E=4.5e-25

Best Hits

KEGG orthology group: K07794, putative tricarboxylic transport membrane protein (inferred from 88% identity to pfo:Pfl01_1352)

Predicted SEED Role

"Tricarboxylate transport protein TctB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WX94 at UniProt or InterPro

Protein Sequence (152 amino acids)

>AO353_17575 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MLLQRIFASVLLLACLGLALMAWPYQAAFSYEPVGPRAFPLLMLGLMGVALLYMVFRPAP
IKHSEDEPPLDRETLTKIGICVVLLLVFAGTFEPLGFIVSSILIGVPMARLYGGRWLPSV
VIISLMSVGLYMLFDRLMDVPLPLGLLDVLEN