Protein Info for AO353_17400 in Pseudomonas fluorescens FW300-N2E3

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 signal peptide" amino acids 7 to 8 (2 residues), see Phobius details transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 36 to 57 (22 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 147 to 166 (20 residues), see Phobius details amino acids 178 to 200 (23 residues), see Phobius details amino acids 212 to 233 (22 residues), see Phobius details amino acids 245 to 262 (18 residues), see Phobius details amino acids 268 to 284 (17 residues), see Phobius details PF00892: EamA" amino acids 7 to 132 (126 residues), 58.7 bits, see alignment E=3.6e-20 amino acids 149 to 282 (134 residues), 56.2 bits, see alignment E=2.1e-19

Best Hits

KEGG orthology group: None (inferred from 93% identity to pfo:Pfl01_1302)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H0C7 at UniProt or InterPro

Protein Sequence (306 amino acids)

>AO353_17400 transporter (Pseudomonas fluorescens FW300-N2E3)
MSSRENTGMALGLLGVVIFSLTLPFTRIVVQEVHPLLNGLGRALFAAIPAAMLLLWRREK
WPTWKQIKGLTLVIAGVILGFPVLSAWAMQTLPASHGALVNGLQPLCVALYAAWLSHERP
SKAFWACAALGSALVLGYALISGAGSIQAGDLLMLGAIAIGGLGYAEGGRLAKEMGGWQV
ICWALVLSTPLLIGPVTYLALQHQGEISAKTWWAFGYVSLFSQFIGFFAWYAGLAMGGIA
RVSQIQLLQIFFTIAFSALFFGEHIEPITWLFAVGVIVTVMLGRKTAVRPAQPGTLPAGI
QIKPFK