Protein Info for AO353_17330 in Pseudomonas fluorescens FW300-N2E3

Annotation: ArsR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 PF12840: HTH_20" amino acids 13 to 75 (63 residues), 47 bits, see alignment E=2.9e-16 PF01022: HTH_5" amino acids 44 to 74 (31 residues), 28 bits, see alignment E=2.4e-10

Best Hits

KEGG orthology group: K03892, ArsR family transcriptional regulator (inferred from 91% identity to pfl:PFL_1337)

Predicted SEED Role

"Transcriptional regulator, ArsR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WX61 at UniProt or InterPro

Protein Sequence (101 amino acids)

>AO353_17330 ArsR family transcriptional regulator (Pseudomonas fluorescens FW300-N2E3)
MSTIDLDEIIKALAHPVRREILHWLKDPTVEFPDQSHSNEHGVCAGQIDQRCGLSQSTVS
AHLATLQRAGLISSRKVGQWHFFKRNEETIQEFLRTFSKEL