Protein Info for AO353_17280 in Pseudomonas fluorescens FW300-N2E3

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 PF05598: DUF772" amino acids 56 to 123 (68 residues), 65.8 bits, see alignment E=4.2e-22 PF01609: DDE_Tnp_1" amino acids 218 to 458 (241 residues), 54.1 bits, see alignment E=2.7e-18 PF13751: DDE_Tnp_1_6" amino acids 346 to 461 (116 residues), 54.8 bits, see alignment E=1.8e-18

Best Hits

KEGG orthology group: None (inferred from 78% identity to psa:PST_0573)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (476 amino acids)

>AO353_17280 transposase (Pseudomonas fluorescens FW300-N2E3)
MTRFIQGEHRGQSTLLPESLDDYVSDTNPVRVVDVFVDELDLAKLGFEGVIPADTGRPAY
HPAILLKIYIYGYLNRIQSSRRLEREAQRNVELMWLTGRLRPDFKTIANFRKDNSKAIRG
VCRQFVVLCQQLGLFEENLVAIDGSKFKAVNNRDRNFTSAKLQRRMVEIESSINRYLTAL
DEADQQEPSTAQPKAARLEEKIVKLKAQMKELQAIEVRLNDSPDKQVSLTDPDARSMMTR
GTGIVGYNVQTAVDTQHHLIVAHEVTNTGSDRDQLSSMGKQAREAMGLETLSVVADRGYF
KSEEILACHNADITAYVPKPMTSGAKADGRFNNDVFIYDATKNEYICPAGQALIWRFSSV
DNGLKLHRYWSSNCQQCPLKLKCTPGRERRVRRWEHEAVLEKMQSRLSNAPEMMRIRKRT
VEHPFGTLKHWMGAAHFLTRKLPGVSAEMSLNVLAYNLKRVMKIMGVGSLIKALAT