Protein Info for AO353_17025 in Pseudomonas fluorescens FW300-N2E3

Annotation: beta-agarase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF17992: Agarase_CBM" amino acids 70 to 182 (113 residues), 26.9 bits, see alignment E=3.6e-10 PF02449: Glyco_hydro_42" amino acids 525 to 639 (115 residues), 21.9 bits, see alignment E=1e-08

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfl:PFL_1280)

Predicted SEED Role

"hydrolase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WKD4 at UniProt or InterPro

Protein Sequence (800 amino acids)

>AO353_17025 beta-agarase (Pseudomonas fluorescens FW300-N2E3)
MIRRSLPAVFALMFAAPLLAAPAGQQTLFNFVRPADVVQVATQDASLPQSNAEQTAEGEV
LRRVTFNPAAQPNLRLTPQSGAWDWSQSGVMSLRIQSAMNWPVTLYVKIQSNDGKTLVSR
IDLPAGPAQTLLVPLTPSSPLSQGLKAGPPMPITVEGQRVLLTSSTGELDRSQVVSVTLS
MDQPKVAQSIMLERFGVQDGESVVKAAYGSLVDAYGQSTRAKWPEKVTSDEQLKAAANKE
QQQLKTWLAERKRSSLDTFGGWSKGPAFKASGFFRTEKRDGRWYLVTPEGHPFYSLGVNT
VTADTSQTYVAGREAMFESLPANDEPLASHYGEGDNRNGNGADQGRGFNAGRWYDFYGAN
LQRTYGQPCAVTSETKADEAKAEEAKADTATTPCTSHTFDEKRWTGHTLDRLQAWGFNTI
GDWSAPALGLNDRVPYTLPLSIVGDYASISTGTDWWGGMPDPFDPRFAMATERAVAIAAR
DHRDDPWLIGYFADNELAWAGPGDDPKARYALAYGTLKMTTDVPAKRAFLKQLRDKYRNQ
AGLSKAWGIDLPAWELMEDPGFVPPLPSAEHPEIEADFKYFQKVFADTYFKTIADSLKWH
APNHLLLGGRFATSTPEAVESCAQYCDVLSFNMYTLKPQDGYDFAKLQALDKPVLITEFN
FGSRDRGPFWGGVTELAKEEDRGPAYANFVKQAVSEPSIVGVHWFQYLDQPVSGRLLDGE
NGHFGLVGITDLPFQGFVESVRKANLQAVDQLGKEAEKAKAAADKADSAGHEDTAGKKGR
DSKGAGQGAGHAGGHSANGH