Protein Info for AO353_16750 in Pseudomonas fluorescens FW300-N2E3

Annotation: phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 transmembrane" amino acids 110 to 128 (19 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 181 to 199 (19 residues), see Phobius details amino acids 219 to 251 (33 residues), see Phobius details amino acids 257 to 281 (25 residues), see Phobius details amino acids 293 to 310 (18 residues), see Phobius details amino acids 312 to 312 (1 residues), see Phobius details amino acids 324 to 347 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 59% identity to pfo:Pfl01_1157)

Predicted SEED Role

"Phage tail length tape-measure protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VW08 at UniProt or InterPro

Protein Sequence (587 amino acids)

>AO353_16750 phage tail protein (Pseudomonas fluorescens FW300-N2E3)
MAETEKIEKKAVLLTGIDELSPKLKDLRAKVDGFKTNLEQAGMGRLDISGLFKGGSVVTP
FVEGIKSAAAFQGKLAEVSELAKGVDVPSVPKSAAQNLNVFSASMDKVSVAVDAALMPAV
SAVVVGLEPLLNGVGTLLNDNPELVQGIAAGAIAFSAIQSAVTGASQALDLMSTVLKTSP
LMLIAMGIALVAGVIVANWKPISAFFAGLWQEIAPVVMPMVEFFKTMFAFTPLGLIINNW
GPISQVFAALWDVIKAAASLLFEAFKVIFSWTPLGMIIANWRPISSFFSSLWQGVKAVAV
PVIDFFKTLFSWTPLGMIVSNWQPLVGLFSAIWDLLRALSVPVVSFLKSLFDWSPMALVS
AAWDPLSNYFSGMWQTLEVMAQPVVDFFKGLFDWSPMMQVSAAWQPLSEFFSGLWDSLTS
VTAPVGELFKTLFDWSPMQMITEHWTPIIAWFSGLWEKLKAIIEPIKDLFGGSVSGFIAK
ITGKVEGLTEAQQKTNAEGKGELAPAFFGASSDQASLSSDLPKGSNALVQQSAANNRAQL
EGGLTVRFENAPAGMRTDQPQTNQPGLAVTSQIGYRSLSLGGSNELA