Protein Info for AO353_16735 in Pseudomonas fluorescens FW300-N2E3

Annotation: phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 PF04984: Phage_sheath_1" amino acids 206 to 369 (164 residues), 85.2 bits, see alignment E=4.9e-28 PF17482: Phage_sheath_1C" amino acids 378 to 490 (113 residues), 48.6 bits, see alignment E=7.4e-17

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a1105)

Predicted SEED Role

"Bacteriophage tail sheath protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WJF2 at UniProt or InterPro

Protein Sequence (498 amino acids)

>AO353_16735 phage tail protein (Pseudomonas fluorescens FW300-N2E3)
MAIGFSNIPADIRVPLFYAEMDNSAANSASSAMRRLIVAQVNDNVASAEVGKLVLVSSVA
LAKSIGGQGSMLASMYETWRKTDPVGEIWCLPVHNTVGSIAKGVLTLTGTATESGVLNLY
VGGVRVQAAVVNAATAAQAATALALKINASADLPVTAAAVEGVITLAAKWTGDSANDISL
QFNRLGKSNGEDTPAGLTTAITPMAGGAGVPDQVAAVAALGDEPFEFICMPWTDTATLNT
WQAVMDDSVGRWSWAKQLFGHVYTAKRGTVGTLVAAGQTRNDQHMTIQALELGVPQPFWV
QAAALAARTSVFISADASRPTQSGSLPGVEPAPASERFTLTERQSLLNYGIATAYYEGGY
VRIQRAITTYQKNAYGQADNSYLDSETMHQSAFIVRRLQSVITSKYGRHKLAADGTRFGA
GQPIVTPSTIRGELIAQYAKLELEGHVENAELFAEHLIVERDSQDPSRVNVLFPPDYING
LRVFALLNQFRLQYDNAA