Protein Info for AO353_16500 in Pseudomonas fluorescens FW300-N2E3

Annotation: outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 799 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 754 to 776 (23 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 23 to 799 (777 residues), 857.7 bits, see alignment E=4e-262 PF07244: POTRA" amino acids 92 to 171 (80 residues), 56.1 bits, see alignment E=9.8e-19 amino acids 176 to 262 (87 residues), 67.9 bits, see alignment E=2.1e-22 amino acids 265 to 343 (79 residues), 60.2 bits, see alignment E=5.2e-20 amino acids 347 to 419 (73 residues), 56.2 bits, see alignment E=9.1e-19 PF01103: Omp85" amino acids 447 to 799 (353 residues), 316.1 bits, see alignment E=6.7e-98

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 93% identity to pba:PSEBR_a1073)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WWP4 at UniProt or InterPro

Protein Sequence (799 amino acids)

>AO353_16500 outer membrane protein assembly factor BamA (Pseudomonas fluorescens FW300-N2E3)
MKRLLLTAVLTVLMIAEVHAESFTISDIRINGLQRVSAGSVFGALPLNVGEQADDRRLVE
STRALFKTGFFQDIQLGRDGNVLVITVVERPSVASIEIEGNKAISTEDLMKGLKQSGLAE
GEIFQRATLEGVRNELQRQYVAQGRYSATVDTEVVPQPRNRVGLKVNINEGTVAAIQHIN
VVGNTVFPDEDLIDLFELKTSNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMDIA
STQVSITPDKKHVYITVNINEGQKYNVRDVKLSGDLKVPEDQVKALLLVQKGQVFSRKLM
TTTSELITRRLGNEGYTFANVNGVPTPHDDDHTVDITFVVDPGKRAYVNRINFRGNTKSE
DEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPAVPGVDDQVDVNYAVEEQ
PSGSITASVGFAQSAGLILGGSITQNNFLGTGNKVSIGLTRSQYQSRYNFGYVDPYWTAD
GVSLGYNAFYRTTDYKNLDVNVSSYAVDSLGAGVNVGYPISETSRLTFGLTAQQDKIKTG
QYTVDEIFNFVNTEGDQYLNFKASAGWSESTLNKGVLATRGHSQSLTLEATTPGSDLSFF
KLDYRGQLFQPLSENYTMRLHTELGYGDGYGSTSGLPFYENYYAGGFNSVRGFKDSTLGP
RSTPSRGAGGANGTGNAGTLADPDQDPLPFGGNVLIQGGVEVLFPLPFVKDQRSLRTSVF
WDVGNVFDSKCEQVRNTNGSLSNTQCNDISLSNMASSVGVGVTWVTALGPLSFALAMPVK
KPDSNAETQVFQFSLGQTF