Protein Info for AO353_16125 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 7 to 25 (19 residues), see Phobius details amino acids 39 to 59 (21 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 142 to 160 (19 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 274 to 292 (19 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details PF10129: OpgC_C" amino acids 5 to 364 (360 residues), 390.3 bits, see alignment E=8.1e-121

Best Hits

KEGG orthology group: None (inferred from 74% identity to pfs:PFLU1105)

Predicted SEED Role

"OpgC protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VVA9 at UniProt or InterPro

Protein Sequence (374 amino acids)

>AO353_16125 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MTQGRDLRIDFFRGLALIFIFWDHVPHNPLAHFTVRNFGFSDAAEIFVFLAGYAAVLAYG
KIARRDGLLLATVKILRRAWLLYVVHIFLLAVLMGIVFFANSHVETRDLVQEMGLQYFLS
NPQQALVDELLLRFKPNLMDPLPLYILLLLGLPLVLPMLLRKAEYVVGLSVVLYMLAPWF
QWNLAATDGGVWFFNPMAWQLLFILGGAAAIHGQRPAVPDTRTLPRQPLFVAAATYLLIT
GLIAVSWNWPTVHDAFMPRMLGEWLYPISKTNLSPARLLHFLALAYVIAKLLPNSGWTQN
WLARQSCRMGRYSLEVFCLGVLLAPLADMLNSLAGDALVMQIFSALLGAGLMAVLAAWLD
WNKRLNRPAQVAAV