Protein Info for AO353_16110 in Pseudomonas fluorescens FW300-N2E3

Annotation: glycosyl transferase family 51

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1048 transmembrane" amino acids 34 to 53 (20 residues), see Phobius details PF00912: Transgly" amino acids 162 to 354 (193 residues), 66.7 bits, see alignment E=1.8e-22 PF00905: Transpeptidase" amino acids 858 to 961 (104 residues), 25.5 bits, see alignment E=7.5e-10

Best Hits

KEGG orthology group: None (inferred from 71% identity to pen:PSEEN1178)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W709 at UniProt or InterPro

Protein Sequence (1048 amino acids)

>AO353_16110 glycosyl transferase family 51 (Pseudomonas fluorescens FW300-N2E3)
MGALWQSDSSEAVVPTDNVEEAPSPKKPRRRRYGWRLFWLLLLIILVALGWAASKEMRTS
KLQAREFSQFAASLSYSMQPGPSDSIFYPGAGPFDKRLGYSSLGEFLPRLLKRGYMISAQ
TRFSPKLFNYSEKGFFVPYAEKIQAGLSITDCRALPLYQYNYPQQLYSSFAAIPPLVVHS
LLFIENRDLLDPKQPLANPAVDWPRFGKAAWSQIAKLLHLPGQTAGGSTLATQLEKYRHS
PDGLTVSGSEKIRQMISASVRAYQDGPQTLTARQNIVRDYLNSVPLSAVPGHGEVHGMAE
GLRVWYGADFNQVNKALTSVASDPLSLSQRGLALRQVLSLMIAQRRPSHYLANGRDELAE
LTDSHIRLLAQNGVIDDPLAAAALASKVTYRDWQQQPTIQPIESNKGISVARSRLAALLN
RPLYDLDRLDLSATSTLQYDLQTKATAYLKHLADPTYAAQLGLLGEHLLTPTSTTQVRYS
FTLFERTPDGSRVRVQTDSTDQPFDINEGSKLELGSTAKLRVLTSYLQIISELHDRYGDQ
SPAELKKTAVPEQDVISRWAVDYLIQNTDRSLPKMLDAALNRTYSANPGESFFTGGGLHT
FHNFRKEDNGRSPTLRDALRESINLPFIRLMRDLVRYSTYSGPNSSGQLLSDDDNPRRQE
YLAQFADHEGTAFLLRFWKKYQKKDTQARLETFLDSMHPTAIRLAAVHRYLLPEASQESF
NSFVRAHLKTAKNTDKNIDRTAGKINEKLTDERLEKLYKTYGPGAFDLPDQGFIAKVHPL
DLWLMGYLLNHPDAKFSQIVKASEFERQEVYSWLFKSRHKSARDSRIRTMLEIEAFLDIH
QRWQKVGYPFDHLVPSLATAIGSSGDRPAALAELIGTILNDGVRMPTLRIDSLHFAAGTP
YETTVINDPDKGKRVMPSEVATAMREALSQVVDAGTAKRVAGTFKLPNGTPLAMGGKTGT
GDNRIEAFGSGGRVLSSKSINRTATFVFYIGEHHFGTLTAFVPGASAEAFKFTSALPVQV
LKGMAPILTPYLQPGSNTLCLPVNVAQR