Protein Info for AO353_16080 in Pseudomonas fluorescens FW300-N2E3

Annotation: pilus assembly protein PapC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 840 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF16967: TcfC" amino acids 273 to 337 (65 residues), 77.2 bits, see alignment 5.6e-26 PF15976: CooC_C" amino acids 730 to 825 (96 residues), 79.3 bits, see alignment E=1.9e-26

Best Hits

KEGG orthology group: None (inferred from 76% identity to pfo:Pfl01_4570)

Predicted SEED Role

"CFA/I fimbrial subunit C precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WC07 at UniProt or InterPro

Protein Sequence (840 amino acids)

>AO353_16080 pilus assembly protein PapC (Pseudomonas fluorescens FW300-N2E3)
MFPMTPIATALALCFCATALAAPADNGHTPRSLLAQAKGLPSEFEEHFFDVPLAVRVELD
QQFLGEAMVVLTRDDRITLVDFNDVGDSTIQPSERDIWANHLKQGVTLGACQANCPEQLL
AVHYSLENSLVSILTENAERDDQVQQYYNLPEGGSTGLIVRNQLNLNGGQNQDLGGRYGL
EASSSLGNWTQAVNMQLSRLGGVDNQTYHAVHELFTQRELQGNFLRLGYFTPTSEGLTRQ
PRTFGASPDTALGVMYGSSDSLAINNPKPAVYPIYVTANRLGSVEIYRDGLLINTQAVPA
GLQTLDTRPLPGGIYEVEVRLIEDGQITSSTLELVYKPSNWRNHDERWRYNLFAGRESKL
LSNWEQQAAGDMTAGAAFNFLWHPRVILGLTGRQVRDSLQYGTSVDWTIVNNASLFANVY
RTEDYGTGLDVQGLYSYGSGSLVASHNRSWLDTTRLYDTLPDGTRVRQRNVFIGQTSNSS
LSLNHRLSRKSSVNARVSHSEGNTKGVGLDLGWTQRTQLFGSDANWRLSLFDRPGSFSSG
NDRNRGLDLSVNIALGGPGEQWSGSIGTRTDRDGGRDNNASLTYRKDLQDHLLQSVSATA
ITDTYGIGLNAMASMQSDLANGDGFIQRSSFNNDLTGGLNLDSTVAVGGQKMVMTSQYHR
SGAGMIIDVESDIDGITLRADDLSGGSAVLKPGRNFVPITAYKSSSVSFDFEGTDVPAAT
IQPARSSYHLNKGGVGYRQIRVMQTLTVLGRLIDPQGNPLKGHHIINHASRGVSEVDGFF
SMEMNAGSPTLEVRHGNQLLCQFRLDPSQGRTENNVLMIGDLRCTPDTLADVGDAVQSAG