Protein Info for AO353_15940 in Pseudomonas fluorescens FW300-N2E3

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 241 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 41 to 58 (18 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 124 to 149 (26 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details PF01925: TauE" amino acids 9 to 234 (226 residues), 106.1 bits, see alignment E=1.2e-34

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 92% identity to pfl:PFL_4942)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VWA8 at UniProt or InterPro

Protein Sequence (241 amino acids)

>AO353_15940 permease (Pseudomonas fluorescens FW300-N2E3)
MDWLVIGLGISLAYIVFGVAGFGTALVAGPILILFMPLSKIVPLLVLLDFIAAFGNLLPS
RRDVARPELLRLLPCMAVGCTLGVIFLLNLKSNLLLLLMGLFISAYAIYSLWGTARPTQL
AAAWAIPMGTVGGMFGALFGSGGFLYAIYLNSRLPKDEARATQSALISCSTVVRLSLFAI
AGVYAELPLLVLAVCLLPAMALGLWTGRRLTMKLSREAFVRLVTWLVLASGIALIGRYIS
T