Protein Info for AO353_15380 in Pseudomonas fluorescens FW300-N2E3

Annotation: porin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 PF03573: OprD" amino acids 18 to 424 (407 residues), 470.2 bits, see alignment E=3e-145

Best Hits

KEGG orthology group: None (inferred from 87% identity to pfl:PFL_5053)

Predicted SEED Role

"Outer membrane porin, coexpressed with pyoverdine biosynthesis regulon" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WRI9 at UniProt or InterPro

Protein Sequence (426 amino acids)

>AO353_15380 porin (Pseudomonas fluorescens FW300-N2E3)
MAATMAANVQAADDSSREGFVEGASLKLNARNYYLNRNRQQQTNDNIEWGQGFLGIFESG
YTQGPVGFGVDANAMLGLKLDGGGGTGGSSILPIGDDNSKAPGSFSSAGGALKMRALDTE
LKAGDLFLNNPVIAGGMSRMLPQTFRGVSLTNHSFDGWLIEGGQASFTKPYNQSGHQRIG
TSYGKLADGDKSQHLNWAGVAWSGLPGLTSSLYASELKDIWNQYYYDLDYTYAVNELISL
NPGLHYYHTQDTGDALLGKIDNNTYSLHFTVGVGSHSVTAAYQRVNGNTPFDYIAQGDSI
FLDNSQQYSDFNGPNERSWKLKYAYDFAGVGVPGLTSAVSYSRGTLDLTKVDPNSLGYAS
FYNEAGKNAKHWERDVDLKYVVQGGTAKDLAVRLQWATNRGGNGYGALDTDTDEYRVIVD
YPLNVF