Protein Info for AO353_15110 in Pseudomonas fluorescens FW300-N2E3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 26 to 52 (27 residues), see Phobius details amino acids 60 to 84 (25 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details amino acids 246 to 265 (20 residues), see Phobius details amino acids 280 to 304 (25 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details amino acids 339 to 363 (25 residues), see Phobius details amino acids 375 to 397 (23 residues), see Phobius details amino acids 408 to 425 (18 residues), see Phobius details PF00083: Sugar_tr" amino acids 26 to 208 (183 residues), 77.6 bits, see alignment E=9.7e-26 amino acids 231 to 429 (199 residues), 38 bits, see alignment E=9.8e-14 PF07690: MFS_1" amino acids 29 to 324 (296 residues), 73.2 bits, see alignment E=1.9e-24 amino acids 258 to 439 (182 residues), 43 bits, see alignment E=3e-15

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfl:PFL_3682)

Predicted SEED Role

"Citrate-proton symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WGT8 at UniProt or InterPro

Protein Sequence (448 amino acids)

>AO353_15110 MFS transporter (Pseudomonas fluorescens FW300-N2E3)
MPVQPLTRPDPARDTPTPGAGKKSIFAVVLGNAVEFFDFGVYATFAVMIGHTFFPSDSAF
VSLMLSVIAFGTGFIVRPLGAVLIGAYADRVGRKPAMLLTLVMMAVGTGSIAILPGYETI
GIAAPILLVVTRMIQGLAWGGEAGPATTYILEAAPPHKRGTYACWQVVAQGVAAMVAGLV
GFTLTKVLSPEDLNSWGWRVPFVFGLLVLPIGIYIRRNLAETFHGHTEQTRTGDLVREIV
GKHRRALVLGLLILSGSTITQYFLNYMTTFALTELKLPTSIAMLSTLVAGAAMAVCAVAG
GMLCDRFGRRVILMTPRVVLLLILFPALQLMTEHPSSATFLLTLAVLSGLHGMSGAALIV
LLVESFPKSVRATGFSIVYAFGVAAFGGTAQIIITWLIGTTGDPMSPVWYLLIANLVCLT
AAWFAKETRPLLPERPARETRLAEAQVH