Protein Info for AO353_14770 in Pseudomonas fluorescens FW300-N2E3

Annotation: outer membrane lipoprotein LolB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR00548: outer membrane lipoprotein LolB" amino acids 3 to 200 (198 residues), 252.6 bits, see alignment E=1.2e-79 PF03550: LolB" amino acids 48 to 198 (151 residues), 171.9 bits, see alignment E=5e-55

Best Hits

Swiss-Prot: 89% identical to LOLB_PSEPF: Outer-membrane lipoprotein LolB (lolB) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K02494, outer membrane lipoprotein LolB (inferred from 90% identity to pba:PSEBR_a4761)

Predicted SEED Role

"Outer membrane lipoprotein LolB precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VQ83 at UniProt or InterPro

Protein Sequence (205 amino acids)

>AO353_14770 outer membrane lipoprotein LolB (Pseudomonas fluorescens FW300-N2E3)
MFLRHIIVFSFIALLAGCAGFGARESVEGHGNPAQWREHKQQLTSLDGWQINGKVGIRAP
KDSGSGTVFWLQRQDYYDIRLSGPLGRGAARLTGRPGQVSLEVANQGRFEAPTPEALLEE
QLGWKLPVSHLVWWVRGLPAPDSKSRLNLDADSRLATLEQDGWQVEYLSYIQQNGYWLPE
RIKLHGTDLDVTLVIKDWQPRKLGQ