Protein Info for AO353_14685 in Pseudomonas fluorescens FW300-N2E3

Annotation: chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 685 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 331 to 351 (21 residues), see Phobius details PF00672: HAMP" amino acids 364 to 403 (40 residues), 25.6 bits, see alignment 1.2e-09 PF00015: MCPsignal" amino acids 483 to 649 (167 residues), 139.7 bits, see alignment E=9.2e-45

Best Hits

KEGG orthology group: None (inferred from 89% identity to pba:PSEBR_a4773)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WVT8 at UniProt or InterPro

Protein Sequence (685 amino acids)

>AO353_14685 chemotaxis protein (Pseudomonas fluorescens FW300-N2E3)
MQAFLAPGIGLLGRFGFARKFQLLFLLFILPLAGSLWMIGQDYRDKLSLIAGERAGVRQL
IALDALDNLLAAQRDRAARWRATETNRQPTPATVAAMAAFDAVQPALNQAVNDLGHALTT
EGAEADTLSRYQTLQTALNGLDSKSLSSVGWWPDGYERFTAALSALQALREQIAMDNRLT
LAPWLETYLLTQISTQHAPDLIERVGRLASIGQASVVSGQFSLQSRLQLRDLRGRIGDAR
EQLIKTGSLLEARLPSALQAWAGQYHDSLKHLDTGLKGLDDGMFGASITLKPEDFERNLD
ALLSDLASLRQQTLVSLDQRLDYYHGSAIRQFILVASVLGCLLLAALYLFICLQASIRRS
ASGITLLAEALRDGNLSLQVPVHGRDELAAISTALNVAVVQLRTSLLGVDHETLQLGNAV
RALNTHASEALGEVEAQQLQISQIAAAATQLAATSQGVAQSCEHASGSAQQTQRIAAESS
RDSQRTTASIQQLNQRLNDTAAALGRVSEQGQQIQLVVDTIRGVAEQTNLLALNAAIEAA
RAGEQGRGFAVVADEVRSLSQRTQSSTAQIAGTVDSLRSTVNEAVTLMEAACGQAQTDAQ
AVTGLGERLGEIASAVQSVTDTLAQIATAVEEQASTADEVSGNIQQVDQAAVRLLEGARA
VNLAADTLSSGSKALSENTGRFQLG