Protein Info for AO353_14360 in Pseudomonas fluorescens FW300-N2E3

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 51 to 73 (23 residues), see Phobius details PF09995: MPAB_Lcp_cat" amino acids 42 to 271 (230 residues), 240.4 bits, see alignment E=1.4e-75

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfs:PFLU5245)

Predicted SEED Role

"FIG00953497: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WVP9 at UniProt or InterPro

Protein Sequence (290 amino acids)

>AO353_14360 histidine kinase (Pseudomonas fluorescens FW300-N2E3)
MEFIRSRIETQIMSLSGLSLGKLDLENPKGDPGLFGPDSVSWQVHGDFSSMLIGGISALM
LQALHPLALAGVWDHSNFREDMLGRLRRTGQFISGTTFGSRQDAEWLIEKVRTIHLQVVG
TAPDGRPYAASDPDLLTWVHVAEVSNFLAAHLRYRNPNLSPTDQDRYYSEIALVAERLGA
RDVPRSRREISEYLERIRPQLLCDERSREVLRLLLAAPSPSRLARPFGGLMMQAGIDLLP
DWASDMLGVRQNPLQRKLIRASVNRSAPMLRWAVRNGSVQRAKRRMGIPS