Protein Info for AO353_14215 in Pseudomonas fluorescens FW300-N2E3

Annotation: DNA transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR03302: outer membrane assembly lipoprotein YfiO" amino acids 5 to 244 (240 residues), 277.2 bits, see alignment E=5.4e-87 PF13512: TPR_18" amino acids 27 to 165 (139 residues), 175 bits, see alignment E=1.1e-55 PF13525: YfiO" amino acids 29 to 232 (204 residues), 250 bits, see alignment E=1.9e-78

Best Hits

Swiss-Prot: 77% identical to BAMD_PSEAE: Outer membrane protein assembly factor BamD (bamD) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K05807, putative lipoprotein (inferred from 92% identity to pba:PSEBR_a4842)

Predicted SEED Role

"Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WIG3 at UniProt or InterPro

Protein Sequence (338 amino acids)

>AO353_14215 DNA transporter (Pseudomonas fluorescens FW300-N2E3)
MQVKHLLLIAILALTAACSSKEVVDENLSEVELYQQAQHDLDNNSYTSATAKLKALESRY
PFGRYADQAQLELIYANYKNAEPEAAKSAAERFIRLHPQHPNVDYAYYLKGLTSFDQDVG
LLARFLPLDMTKRDPGAARDSYNEFAQLTSRYPNSRYAPDAKQRMIYLRNLLASYEIHVA
DYYLTRQAYVAAANRGRYVVENFQETPSVGDGLAVMVESYQRLHLDELANTSLETLKLNY
PNHPTLVDGQFVPRVAEADNRSWLSKATLGLIESRPPLPPGETRANQDVMKQFQDAKDAI
PAELKPKEGDAVEEQPHEAEGKSSDRSWFSRLTFGVFD