Protein Info for AO353_14185 in Pseudomonas fluorescens FW300-N2E3

Annotation: pilus assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1053 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 562 to 891 (330 residues), 166.3 bits, see alignment E=5.5e-53

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WD26 at UniProt or InterPro

Protein Sequence (1053 amino acids)

>AO353_14185 pilus assembly protein (Pseudomonas fluorescens FW300-N2E3)
MRNTEARRREPRRWLTQLVCGWLLGLYLAAPAYAFTPSDSPLLGASAVAPNVLLLLDDSG
SMNSIIYASGFAPTVSRTPAQQCNALFGLCFSGSAIVGDPILLSSLPQSGCSSGYYAFYK
NSLTPLCLKLPDPVGGGNTRYSDNYISYLVSLANGNNRDFTDGSIPNDYRINVARNVATA
LITSNRGLRFGLATYNSPNTHGNSDGNHGNGVGSGIGNNNAGNGGYIVNDISDLTVVSGS
VTQAQADANYNALISSVGALSAISNTPLAETYYEITRYFRGMTPYYNSGPATYTSPIQYR
CQKNYGVVITDGLPTYDRSFPNDDPLGGTRLPNWDGINNDGNDLNGDDEGDTLYLDDIAK
FAFDIDMRSTGTDLAGKSWSSPDFPKQNLNTYTVGFTTANQMLADAARYGQGKYYQATDS
ASLNTALSAALSDISTKAGSGGSGVASSNTLTSGSSYFQTGYDPKDWRGTIKAFGFTSSG
AVDTTSVLWTTDTAIVPGATAPTYQSWNTTTNAAVTLAYGNFSSTQQTSLSQNLPTGISG
SDLVEWSKGTNKTGLKTRAVLLGDIINSPLTLASPTDKTASDLAGSTSYSTFLTSKAANM
NTSLVVNANDGFVNVINAGNGARLYGYMPSSVLSSLHFIADTAYINGTSHKFLNDGQVGV
FDAQLNNAWKTLALGGVGAGGKTFYAVQLFDGTAGNVTNALWEISAPTTANTANAFNDLG
YAYARPEVARLADGRWAAFISNGYGSNSGVAALYVVDIRDGSLIRKIVIDSTETTNGLSS
VKLKVDSQSIVQAAYGGDLKGRMWKFDLSSSNPASWGVAFSGKPLFTAPGGATQPITAQP
LLADHPINGKEVFFGTGKFNETADKLSKDQQAFYGVWDADGGSGQISVSSLQAQAVTGVF
TGTAGGQFITTSQNPVTYPAQNGWYLPLVYNNALTGERVINQAALVLGRIVFTTASIDTT
DPCSSFGNGKLVELDAFSGKMLNYAVLDTNGDGLVDTNDTISSGVIFTGGIPTLNAIVNS
ATRKIVNDSSGGITTLVEKSGGGSRRIMWRQIQ