Protein Info for AO353_14070 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 162 transmembrane" amino acids 13 to 33 (21 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 138 to 156 (19 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 1 to 161 (161 residues), 234.5 bits, see alignment E=4.2e-74 PF03350: UPF0114" amino acids 9 to 125 (117 residues), 127.7 bits, see alignment E=1.4e-41

Best Hits

Swiss-Prot: 91% identical to Y5318_PSEFS: UPF0114 protein PFLU_5318 (PFLU_5318) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: None (inferred from 95% identity to pfo:Pfl01_4866)

Predicted SEED Role

"Putative inner membrane protein (Fragment)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W6C9 at UniProt or InterPro

Protein Sequence (162 amino acids)

>AO353_14070 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MERFVENAMYASRWLLAPIYFGLSLGLLALALKFFQEVFHVIPNVFSMAESDLILVLLSL
IDMALVGGLLVMVMISGYENFVSELDIDEGKEKLNWLGTMDSSSLKMKVAASIVAISSIH
LLRIFMDARNVDPEHLKWYVIIHMTFVISAFAMGYLDKLTKH