Protein Info for AO353_13865 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 36 to 57 (22 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 98 to 120 (23 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details PF04657: DMT_YdcZ" amino acids 8 to 144 (137 residues), 150.3 bits, see alignment E=2.2e-48

Best Hits

KEGG orthology group: K09936, hypothetical protein (inferred from 70% identity to psa:PST_0983)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VUQ2 at UniProt or InterPro

Protein Sequence (149 amino acids)

>AO353_13865 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MPAPVWWLLCLPFVAGAFLPLQAGINGQLAKQVSSVLAAALISFFVGTVALFLLVLVQRE
TPALETLKSLTWWHWSGGLLGAFFITTAAFAGPRIGAMLFMALVLAGQLGMAMTLDHFGW
AGFREAPVSAGKIAGLVLIMAGVFFIRRG