Protein Info for AO353_13825 in Pseudomonas fluorescens FW300-N2E3

Annotation: pilus assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 PF16968: TadZ_N" amino acids 6 to 132 (127 residues), 162.5 bits, see alignment E=2.1e-52

Best Hits

KEGG orthology group: K02282, pilus assembly protein CpaE (inferred from 89% identity to pfo:Pfl01_0647)

Predicted SEED Role

"Flp pilus assembly protein CpaE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WCX4 at UniProt or InterPro

Protein Sequence (396 amino acids)

>AO353_13825 pilus assembly protein (Pseudomonas fluorescens FW300-N2E3)
MSQNLSQTFLAITRNSTDLEWLQGALAPLGQVVSAGGGSLDELLALVDVTFASLVFIGLD
RDHVVAQSALIEGALAAKPMLAIVALGDGMDNQLVLNAMRAGARDFVAYGSRASEVSGLV
RRLSKRLPPVATTTQMGGLTVLFGTQSNADGALLAGHLALVIQKSGQHTLLLDLGLPRGD
SLALLGLESSFHFGDALRHLRRLDATLIDSAFTSAEAGLRILAYANNDEPLERTSAAELY
MLLSALRQHFQHIVVNLTGQPDSEALRTFVSHCDKLLWYTDQSVLDCRRNLTVLNLWREK
GMKLEHAQLLVDRYLRHSAPDADTLGKTFGLEVIAVLAYSPEVRLNAKNQGVTLFDLAPR
EVLTQSLRTLGERLAKHSETLATPKISWLNRLRGHK