Protein Info for AO353_13375 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 111 to 133 (23 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details TIGR03717: integral membrane protein, YjbE family" amino acids 13 to 189 (177 residues), 192.6 bits, see alignment E=2.3e-61 PF03741: TerC" amino acids 14 to 187 (174 residues), 145 bits, see alignment E=1.1e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H034 at UniProt or InterPro

Protein Sequence (407 amino acids)

>AO353_13375 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MLFDGALHALSMVFEVFLLDLILSGDNALVIALACRGLPPEQLRRAVLIGTSGAIVLRAL
LTTLAGWLLLVPWLKLIGALLLLVIAIRLLTEEEAGEEGDSSDGSPQTLGSAVVTVLTAD
LIMSMDNVVGLAAVAQGSVFYLVLGLLLSVPLLMFGSLQITRLLQRQPVLVSFGAALLGY
VAGDIAVSDPVVVGWVNSQSPALNQVVPLLCGVYVVLQARIILRQRARLPKPALVQPVAR
AVRFQQPDSDPVTLPVVKPEVVLTASPAPAIEASNDEPPRRLFGDYNGLALVLAGLAGIF
VISAALYSLVGGLSGGLLPTPQKDYAYVCTGASTTLYYRPGGSTIRLVTGGGEASGYVRY
KTILWRTPQSALKDLHLTLPGEIEKTSATVVTLNGGSFSQIQCARSL