Protein Info for AO353_13345 in Pseudomonas fluorescens FW300-N2E3

Annotation: branched-chain amino acid transporter permease subunit LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 150 to 171 (22 residues), see Phobius details amino acids 200 to 222 (23 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details amino acids 253 to 272 (20 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 9 to 288 (280 residues), 165.2 bits, see alignment E=8.5e-53

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 92% identity to pfs:PFLU0553)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H162 at UniProt or InterPro

Protein Sequence (304 amino acids)

>AO353_13345 branched-chain amino acid transporter permease subunit LivH (Pseudomonas fluorescens FW300-N2E3)
MDGIFLQQVINGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLSY
FGVESFPLLILGTLLFTVFVTGVYGWVIERIAYKPLRNSTRLAPLISAIGVSLILQNYAQ
IAQGSRQQGIPTLLSGGLRFDIGTGFVQITYTKIFILVAAFIGMALLTYIIKYTKLGRMC
RATQQDRKMASILGINTDRVISYVFIIGAAMAALAGVLITVNYGTFDFYAGFVIGIKAFT
AAVLGGIGSLPGAMLGGIILGVSESLFSGVINSDYKDVFSFSLLVLILIFRPQGLLGRPL
VAKV