Protein Info for AO353_12830 in Pseudomonas fluorescens FW300-N2E3

Annotation: type IV secretion protein Rhs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1594 transmembrane" amino acids 243 to 263 (21 residues), see Phobius details amino acids 283 to 307 (25 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details PF20148: DUF6531" amino acids 403 to 475 (73 residues), 70.1 bits, see alignment 2.4e-23 TIGR01643: YD repeat (two copies)" amino acids 592 to 616 (25 residues), 18.6 bits, see alignment (E = 2e-07) amino acids 700 to 729 (30 residues), 23.9 bits, see alignment (E = 4.2e-09) amino acids 755 to 781 (27 residues), 17.7 bits, see alignment (E = 3.9e-07) amino acids 782 to 822 (41 residues), 30.9 bits, see alignment (E = 2.8e-11) amino acids 845 to 886 (42 residues), 36.4 bits, see alignment (E = 4.9e-13) amino acids 978 to 1009 (32 residues), 21.4 bits, see alignment (E = 2.7e-08) amino acids 998 to 1029 (32 residues), 22.9 bits, see alignment (E = 9.2e-09) amino acids 1223 to 1255 (33 residues), 29.8 bits, see alignment (E = 5.9e-11) PF05593: RHS_repeat" amino acids 700 to 731 (32 residues), 33.4 bits, see alignment (E = 7.1e-12) amino acids 762 to 797 (36 residues), 36.2 bits, see alignment (E = 9.3e-13) amino acids 803 to 838 (36 residues), 29.4 bits, see alignment (E = 1.2e-10) amino acids 830 to 860 (31 residues), 22.8 bits, see alignment (E = 1.5e-08) amino acids 866 to 903 (38 residues), 27.1 bits, see alignment (E = 6.4e-10) amino acids 978 to 1009 (32 residues), 28.1 bits, see alignment (E = 3.3e-10) amino acids 1128 to 1161 (34 residues), 22.1 bits, see alignment (E = 2.4e-08) amino acids 1223 to 1257 (35 residues), 30.6 bits, see alignment (E = 5.2e-11) PF03527: RHS" amino acids 1305 to 1338 (34 residues), 57.4 bits, see alignment (E = 1.5e-19) TIGR03696: RHS repeat-associated core domain" amino acids 1331 to 1410 (80 residues), 93.8 bits, see alignment 7.4e-31

Best Hits

KEGG orthology group: None (inferred from 69% identity to pba:PSEBR_a4210)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H021 at UniProt or InterPro

Protein Sequence (1594 amino acids)

>AO353_12830 type IV secretion protein Rhs (Pseudomonas fluorescens FW300-N2E3)
MDQIARIEQELDSFKDTLSLYREQLNRWFIRAADKASHAADLPSLMGMERQIKFGSTTAA
VSSGDDDFISSVAQCPAGGLLQIESKFESVYDVPLGNIQVDVIAVEGGEKTPVLLDENGK
GTFKGIAGKFYRVHVQSGVTPEQVDELFDAYDGLTDELETWLRNEWEGLKPQWSQQSASA
SLAAVGNGMLAGSWAAIQGVWDGIGELSDILKNPEAFVEKLGDSARQLADLAESAPDLME
KAMLLASDEAALCLLMRTAALWLEMLPPTQLAGTSAEAISKVVVGLIIDLLIGLVLSVVG
IGVAWLTVRLAKYGPQIFQAAMGFVRSMITIINNFMTYVDRYKKVAARGVVAGLKKGRMQ
LRWNGRKNSTLNKHEPHVDVPAQAKNPNGDSADSADKTATNKCPVSMVTGEELLTLVDGS
LDGILPFDFTRLYRTSAAEIDSGLGFGWSHSLAHRLEIDGDNVIWIDHENRRTAFPLPNV
ERPAIHNSLARAAIYLGDEPEELILAQAGDDARFYHFHNGRLTTVSDAYNNRLRITRDRQ
ERIKRLDNGVGRALLLRYDRRHLIAVDYQRFVPAPTLDEAWHTEQTLVNYRYDERDQLIE
ATNAAGESERYDYDDQQVILQRQLAGGASFFWEWERSGKAARCIRHWASFSQMDAQYVWD
DQGGVTVLNIDGSEEVYVHDDRARLVRKVDLEGGEHLKAYDDKGRLIAEQDPLGAVTEYR
YDEVGRLVALIPPEDEPTAYEYRDGFLHARYRGKAVWKYQRNAQGDVTEATDPDGHVTHY
HYDTRGRLLSIRYPDTSRHVFVWNGLGQLLEETLPDGGQRRFSYDALGRQITRQDEHGAV
THYQWDAVGRLIQTTLPSGASRAFSYNAYGKIIAERDEQGQVTRYEYADDLHLVSRRINA
DGTQLRYRYDNALLLLTEIENESGEKYQLDYTPNGLIRQETGFDGRRTAYAYDLNGHLLE
KTEFGDDGSTLITTYQRDSAGRLLVKTLPDGVNVEYGYDGLGRLVSVDDGHDHPLEFEYD
QQDRLITEHQGWGTLRYGYDACGQLNRLRLPDNSTLDYHHAKGGALSAIDLNGTRLTTHV
FNAGRERQRQQGQLLSQYHHDEQGRLQSHAVNQSDRPLYMRHYSYAVNGNLAAIADSRHG
QRSYYYDALNRLTRVRHARGEPAQSFEHDPAGNLQMHDRPGLATIKGNRLLLQGDRHYDY
DAFGNLIFERRGTGQKLVTEYRYDCQHRLIGITLPDGKTASYRYDAFGRRIAKTVDGHTT
EFFWQGDNLVAERGKEHYRSYVYEPGSFRPLAMLDGFGPRKACPFYYQLDHLGTPQELTD
YSGEIVWSATYKAYGKLASLKHFGEEQLEQPLRFQGQYFDAESGLHYNRHRYYNPDIGRY
LTPDPIKLAGGLNGYQYTPNPTGWIDPLGLNGNCPPPNKPDCKAPDDVGGAAVDEGEPPL
PKLTGEQRRERIDELAEGVAFRRLEEMERSIRGAHFLQKHGKQTTLEAQRERAITGRNPT
TGIVETYDNGRKAGLPKIPSAATRFTSYRDQLNAIYRAQLILKRNDLAASKEPMNMGKQI
GEGYKRGGVEYGRQTNAVVILNRNGDPITSYTDF