Protein Info for AO353_12730 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 transmembrane" amino acids 37 to 61 (25 residues), see Phobius details amino acids 67 to 88 (22 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 141 to 159 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WCF9 at UniProt or InterPro

Protein Sequence (248 amino acids)

>AO353_12730 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MFNFDKALDLPPQLQWKYADEPELLGWTIRARNYNTFVANCMFAFMSIVIMGGTYAVYSV
APPGESYLSRISASVVFYLSMSFTISCMTHQRMNFAYRFTQSGVECCEWKDFPKWALTFL
KWLAGITAIIFVFLATIDPAFLIGALIGPGGIGLMYLSMANSRSYQKMQTQYHHLTYEWK
DFTQLAIATNRDVVDLKYTMYDNGIVTWSQNIFCKRKQKENVAKLIEPYLSPGVPFIKAK
VNVPLSTD