Protein Info for AO353_12645 in Pseudomonas fluorescens FW300-N2E3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 779 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 253 to 272 (20 residues), see Phobius details amino acids 278 to 299 (22 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details amino acids 342 to 364 (23 residues), see Phobius details amino acids 372 to 395 (24 residues), see Phobius details amino acids 427 to 445 (19 residues), see Phobius details amino acids 637 to 657 (21 residues), see Phobius details amino acids 664 to 682 (19 residues), see Phobius details amino acids 688 to 707 (20 residues), see Phobius details amino acids 715 to 738 (24 residues), see Phobius details amino acids 744 to 764 (21 residues), see Phobius details PF03176: MMPL" amino acids 124 to 395 (272 residues), 24.5 bits, see alignment E=6.5e-10

Best Hits

KEGG orthology group: None (inferred from 86% identity to pfs:PFLU0427)

Predicted SEED Role

"FIG021862: membrane protein, exporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9VUC2 at UniProt or InterPro

Protein Sequence (779 amino acids)

>AO353_12645 hypothetical protein (Pseudomonas fluorescens FW300-N2E3)
MTLPSERRLPRLFLTLLLAVLALAGWQWHDGAPLSANLMDLVPGTAPDALELKAEQRMQE
PLNREMLVLVGHTNREQAIAMTQKLGEQWLASGLFEKVQWNLQADLPALRAQLLQGRLAM
LSAADRQQLIEQPQAFIQQRVQALFDPFTGFSLVPSQDDWLGLTGRIQNSQPQHGSVQLD
IGSGTLVADADGKSWVMLRARTSGNAFDMQLPLKVAELLKHSREEAAQADVQLLAASGLL
YAANGQQQATREITWVGGGATVGILLLLLLAFRRFRVLLAFIPVLVGMLFGAVACVALFG
HMHVMTLVLGSSLIGVAVDYPLHYLSKSWSLKPWHSWPALRLTLPGLTLSLATSCIGYLA
LAWTPFPALTQIAVFSAAGLLGAYLSAVCLLPALLKGTDLRPAQWPLRVAEFLVNVRAAL
LKRVRSSVLLVLVLAFCAGGLWHLTTKNDIRQWVSAPPQLMNEAQTIARITGYQPTSQFF
LVRAANQQQLLERQKALSDRLDQLVNLDKLKGYLALSQLVSLPSEQQQVREALNKLPAFW
QPLLDLGIPATALQTELTQLQALPVEDIDAALVGPLAEPWRPLWLGASDGGVAAMVSLQG
LNDTALLRVQALDLPGVQLVDRLDDLNKVFAATQISAAELKLMSCALIVLLLILPFGFGG
ALRLVALPLLAALCSLASLGWLGQPLTLFSVFGLLLVTAISVDYAILMREQIGGAAVSLL
GTLLAAATTWLSFGLLAISSTPAVSNFGLSVSLGLAFSFILAPWAKPSAHAAPVVEPAA