Protein Info for AO353_11605 in Pseudomonas fluorescens FW300-N2E3

Annotation: glutamine ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 13 to 111 (99 residues), 80.3 bits, see alignment E=6.1e-27 PF00528: BPD_transp_1" amino acids 38 to 216 (179 residues), 67 bits, see alignment E=9.3e-23

Best Hits

Swiss-Prot: 36% identical to GLNP_ECOL6: Glutamine transport system permease protein GlnP (glnP) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K10040, putative glutamine transport system permease protein (inferred from 94% identity to pfs:PFLU0228)

MetaCyc: 36% identical to L-glutamine ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-12-RXN [EC: 7.4.2.1]

Predicted SEED Role

"Glutamate transport membrane-spanning protein"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WFF4 at UniProt or InterPro

Protein Sequence (219 amino acids)

>AO353_11605 glutamine ABC transporter permease (Pseudomonas fluorescens FW300-N2E3)
MASSGLELLWVSLPQLGKGAAQTLSISFLSIAISTVGGVLYGVLCSLNSKWLNALLRVYL
ELFRAIPVLVWLYLLFFGLPIFFGLSLPSFWCAVLVLSLWGASEVGEVVRGALHSLPRGQ
REAGLSIGLSGPQLFGYVLLPQALKRMTPPTINVYTRIIKTSSLAVLIGVVDVIKVGQQI
IERTYESVLIYGALFLFFFFICYPLSAASRVLERRWTQA