Protein Info for AO353_11465 in Pseudomonas fluorescens FW300-N2E3

Annotation: DNA/RNA helicase, superfamily II protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 960 PF06048: DUF927" amino acids 387 to 662 (276 residues), 274 bits, see alignment E=9.2e-86

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfs:PFLU0174)

Predicted SEED Role

"FIG00960122: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WJ62 at UniProt or InterPro

Protein Sequence (960 amino acids)

>AO353_11465 DNA/RNA helicase, superfamily II protein (Pseudomonas fluorescens FW300-N2E3)
MTNKTKRPSFADVKTASLKEISRVLAHWLPNGKRVDGGKEYTAPNPTRTDKRAGSLKVNL
SKGTWADFATGDKGGDLIDLVRYLDGGTDVEACNKLADLLHVTNGAAQSKPSPSKSKTPE
WLAIQPIPAEAMNKCPAKHRQHGAPSKVWVYRDTNGQPVMALYRFDLGPDEDDKPRKVFA
PLTWCQRADGLTQQWRWQGLPEPRPLLRLDELVQRPEAHVILCEGEKAADAAAELLPNYV
AMCWPNGSNSWHKADLTPLKGRSVVLWPDNDASGKSCMDAVAEQLQLIGTASVRVIALDV
FNRKPTVKNGQPTFSKGGQWDDGDDAADAQTKGWTAGHFTELERSGELFGVEPKKAPAEQ
SEAKAKPTTKRAAKPKNDLLPGGFRLTPEGVFYSGDDGEARPVCSPLEILARTRDAQGHN
WGLLVEFDDPDGAKKRWNIPARTMTGDFGKDVLGPLVDMGLRLAGSRSGRNARNDLQSYL
GGFDSAQRARLVTRLGWHDSAFLLPEQQVGSHTEHLHFYEAGAQLPPISEAGTLEQWQEQ
IGALCIGNHRLAFVASVAFAGPLLHMLGHESGGFHLYGDSSGGKTTHLQVAASIYGGPRL
VRSWRSTDNALESIAAAHSDGLLVLDEIGMCDPRIIGETVYMLGNGTGKARANDRGQAGR
QVQEWRLLFLSTGEKTLAQHMAEANKELKAGMEVRMLAVPADASKGLGMFDVLNGFDDAA
ALSDALKARVAKYYGTPLTAFLSALCEPGKRHGWSAILRHTVEGFIAQALPASASGQAHR
AAARFGLAAAAGELATAMGITGWPDGTATTAARVCLSAWMNERGGAGNFEGDAILARLRQ
VIERFGESRFTRWESAAAKIDEHGPRTIDRLGFRKSLEHGMGDTLHTTTTYYVLPEAWRS
EVFKGMNINAVNKELLRRGVLEPGTDGKASTAVRLPGLGLQRCYVVVAVPEQGEREAQAA